Rich,
Great thread - and my .02
I took ALL the rock out of my 180 reef whcih was teeming with life (and mojanos) and baked the $h1t out of it - it sat out in buckets in the driveway the entire winter - sat in RO/DI water in those same buckets in the driveway for over 2 months at 95 degrees (I used a ranco and a 800w heating tube) - then it went into the sun to naturally bake for weeks on end - rain, sleet, snow, sun sun and more sun. It then went into a 90g for baking in RO/Di water for another month - the first month I changed the water out 3 times and by the end it stopped turning p1$$ yellow. By the time that stopped, I started heating the water to normal temperature and using salted water from the systems water changes which was doing pretty well at that point (the prop system was up and running 3 weeks before the tank was p,umbed into it.
When we were ready to put the rock into the tank, it was heated and clean as a whistle. I am attaching a picture here (cover your eyes) that is almost a month after the tank was set up and you can see how white everything is - almost blinding.
I took some choice fiji select that had nice blue and burgandy coralaine algae on it and left it in the tank for about a month or so (after it cycled for a few weeks) and the tank is teeming with coralaine now - pods running around like crazy and the colors are starting to pop - as you can also see, I went with an open look with less rock and am using the shallow sand bed with a remote deep sand bed approach again (just like in my 180).
So, I guess to answer your question - or your statement - I did what you're recommending - bake everything and hand seed it.
House