Oh jeez, it was meant to be a suggestion, the idea of the refugium, not an argument. But I think mine is a good one. Every day I get emails from people who've never even heard of refugiums, what's the harm in the suggestion and attempt to further educate? It seems to me that precisely because someone is new to this endeavor it's a good idea to introduce them to the possibilities, how would they know to ask about something if they're unaware it exists? I'm not saying the original poster doesn't know, but she's not the only person reading this (we hope, yeah?). I know quite a few people who have crafted beautiful reef systems sans foam fractionation and with excellent refugia in situ, so I know it's possible. I'm going to try to keep this as succinct as possible, so here goes...
First, refugia (in which one may house their deep live sand bed and live rock), DSB's and quality live rock are considered a form of filtration. In the presence of refugia, and especially when attempting the most balanced, natural marine (particularly reef) aquarium, use of a protein skimmer can actually undo some of what you're trying to accomplish. To the best of my knowledge, a great deal of micro-flora/fauna will be removed via fractionation, along with those nutrients. I am normally a huge proponent of foam fractionation, and I still generally recommend them to folks for a myriad of reasons.
Nutrient export/conversion will never stop being an issue, and in the absence of these natural methods then I am absolutely all for foam fractionation. What cannot be emphasized enough is the real need for substantial water turnover in the form of water changes (dilution is the solution to pollution--you most definitely will find that in the book), which has not received sufficient mention here. Also, when one has difficulty gaining control of nutrients, foam fractionation is most definitely a handy tool, I'm not arguing that, nor am I saying foam fractionation is useless. I'm saying that if one can well employ refugia then the need for foam fractionation may be greatly reduced, and quite possibly even eliminated (except for occasional use).
I understand that my personal experience is a bit different from others, in that, as a noob all those years ago, I grew my corals and clams under normal output fluorescents (all healthy, thriving, and growing, until the tank was torn down), sans foam fractionation, with a dolomite substrate, and experienced no disease, no crashes, no nuisance algal forms. What I'm trying to present is the idea that, instead of relying so heavily upon foam fractionation and other chemical filtrants, consider relying on natural methods. The more I learn about it, the more I come to believe that it's the wave of the future, plus, how can we believe that humans can devise machinery to accomplish better what Mother Nature has fined tuned for eons upon eons? I don't see why a dedicated and well-educated beginner cannot start off their system with such. Yes, it takes a great deal of research, but I have been under the impression that we all advocate a great deal of research before undertaking reef aquaria in particular.
(I think I could also go so far as to say Bob and Anthony might agree with me, but I will never go so far as to make any of their statements for them.)
However, when one really thinks about it, does it make much sense, when choosing to house filter feeders such as clams, corals, sponges (another "filter", if you will), or (by default, usually) tunicates, to first remove that which feeds them, to then be forced to add (artificially) that which is intended to feed them? (We should not disclude deposit and detrivorous feeders from this picture, either.)