Okay, I have another update.
I decided that House is right and that it would be better to use gallon jugs. So today I cut the label side off of 2 gallon jugs and filled those with the sand. I would take a pic, but there is zero visibility in my tank right now. I'll take it when it clears up.
masterswimmer, thanks for your concern, but I doubt that this sort of setup would directly bring harm to my tank. I have had a 15G setup for about 4 years with a similar setup. The only difference is that now I am placing them in containers so as to more efficiently create an anaerobic environment. In my 15G I made 1/4 of the tank a DSB at 4". The rest of the tank was 2-3 inches. I created a shelf with rocks to hold back the sand on one side of my tank and found that it was not the most efficient way to keep sand in. So this time around I am using th jugs and doubling the volume of DSB as I now have a 33G tank. Also, I ususally stay away from difficult or sensitive animals.
As for detritus, I will fill the few gaps with sand so as to avoid the collection. However I don't see how that would make much of a difference considering that our tanks are full of rock, which allows for detritus traps at every configuration.
Here's a pic of my 15g to show my previous "in tank" refugium. Yes, it wasn't a true refugium, but it did act as a nice filtration system.
Oh I did have one more question. The bottles I am using are gallon jugs that held distilled water. It is a different plastic that poland spring. It is more similar to that from milk jugs. Will this cause any harm? I'm not all that familiar with plastics.